|
| | Publication Year | Title | Author(s) |
| 1 | 30-Jan-2024 | High performance Legionella pneumophila source attribution using genomics-based machine learning classification. | Buultjens, Andrew H; Vandelannoote, Koen; Mercoulia, Karolina; Ballard, Susan; Sloggett, Clare; Howden, Benjamin P ; Seemann, Torsten; Stinear, Timothy P |
| 2 | 11-Jan-2024 | High-performance enrichment-based genome sequencing to support the investigation of hepatitis A virus outbreaks. | Zufan, Sara E; Mercoulia, Karolina; Kwong, Jason C ; Judd, Louise M; Howden, Benjamin P ; Seemann, Torsten; Stinear, Timothy P |
| 3 | 26-Sep-2023 | A statistical genomics framework to trace bacterial genomic predictors of clinical outcomes in Staphylococcus aureus bacteremia. | Giulieri, Stefano G ; Guérillot, Romain; Holmes, Natasha E ; Baines, Sarah L; Hachani, Abderrahman; Hayes, Ashleigh S; Daniel, Diane S; Seemann, Torsten; Davis, Joshua S; Van Hal, Sebastiaan; Tong, Steven Y C; Stinear, Timothy P; Howden, Benjamin P |
| 4 | Aug-2023 | The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia. | Porter, Ashleigh F; Featherstone, Leo; Lane, Courtney R; Sherry, Norelle L ; Nolan, Monica L; Lister, David; Seemann, Torsten; Duchene, Sebastian; Howden, Benjamin P |
| 5 | 4-Jan-2023 | An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance. | Sherry, Norelle L ; Horan, Kristy A; Ballard, Susan A; Gonҫalves da Silva, Anders; Gorrie, Claire L; Schultz, Mark B; Stevens, Kerrie; Valcanis, Mary; Sait, Michelle L; Stinear, Timothy P; Howden, Benjamin P ; Seemann, Torsten |
| 6 | 14-Jun-2022 | Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections. | Giulieri, Stefano G ; Guérillot, Romain; Duchene, Sebastian; Hachani, Abderrahman; Daniel, Diane; Seemann, Torsten; Davis, Joshua S; Tong, Steven Y C; Young, Bernadette C; Wilson, Daniel J; Stinear, Timothy P; Howden, Benjamin P |
| 7 | 3-Jun-2022 | State-wide genomic epidemiology investigations of COVID-19 in healthcare workers in 2020 Victoria, Australia: Qualitative thematic analysis to provide insights for future pandemic preparedness. | Watt, Anne E; Sherry, Norelle L ; Andersson, Patiyan; Lane, Courtney R; Johnson, Sandra; Wilmot, Mathilda; Horan, Kristy; Sait, Michelle; Ballard, Susan A; Crachi, Christina; Beck, Dianne J; Marshall, Caroline; Kainer, Marion A; Stuart, Rhonda; McGrath, Christian; Kwong, Jason C ; Bass, Pauline; Kelley, Peter G; Crowe, Amy; Guy, Stephen; Macesic, Nenad; Smith, Karen; Williamson, Deborah A; Seemann, Torsten; Howden, Benjamin P |
| 8 | 12-Apr-2022 | Multi-site implementation of whole genome sequencing for hospital infection control: A prospective genomic epidemiological analysis. | Sherry, Norelle L ; Gorrie, Claire L; Kwong, Jason C ; Higgs, Charlie; Stuart, Rhonda L; Marshall, Caroline; Ballard, Susan A; Sait, Michelle; Korman, Tony M; Slavin, Monica A; Lee, Robyn S; Graham, Maryza; Leroi, Marcel J ; Worth, Leon J; Chan, Hiu Tat; Seemann, Torsten; Grayson, M Lindsay ; Howden, Benjamin P |
| 9 | 26-Jan-2022 | Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings. | Higgs, Charlie; Sherry, Norelle L ; Seemann, Torsten; Horan, Kristy; Walpola, Hasini; Kinsella, Paul; Bond, Katherine; Williamson, Deborah A; Marshall, Caroline; Kwong, Jason C ; Grayson, M Lindsay ; Stinear, Timothy P; Gorrie, Claire L; Howden, Benjamin P |
| 10 | Nov-2021 | Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis. | Gorrie, Claire L; Da Silva, Anders Gonçalves; Ingle, Danielle J; Higgs, Charlie; Seemann, Torsten; Stinear, Timothy P; Williamson, Deborah A; Kwong, Jason C ; Grayson, M Lindsay ; Sherry, Norelle L ; Howden, Benjamin P |
| 11 | 20-Oct-2021 | Daptomycin Resistance Occurs Predominantly in vanA-Type Vancomycin-Resistant Enterococcus faecium in Australasia and Is Associated With Heterogeneous and Novel Mutations. | Li, Lucy; Higgs, Charlie; Turner, Adrianna M; Nong, Yi; Gorrie, Claire L; Sherry, Norelle L ; Dyet, Kristin H; Seemann, Torsten; Williamson, Deborah A; Stinear, Timothy P; Howden, Benjamin P ; Carter, Glen P |
| 12 | 20-Sep-2021 | Genomic epidemiology and antimicrobial resistance mechanisms of imported typhoid in Australia. | Ingle, Danielle J; Andersson, Patiyan; Valcanis, Mary; Wilmot, Mathilda; Easton, Marion; Lane, Courtney; Barden, Jessica; da Silva, Anders Gonçalves; Seemann, Torsten; Horan, Kristy; Ballard, Susan A; Sherry, Norelle L ; Williamson, Deborah A; Howden, Benjamin P |
| 13 | 13-Sep-2021 | Accessible Platform for High-Throughput COVID-19 Molecular Diagnostics and Genome Sequencing Using a Repurposed 3D Printer for RNA Extraction. | Vandelannoote, Koen; Buultjens, Andrew H; Li, Lucy; Sharkey, Liam K; Herisse, Marion; Pidot, Sacha J; Hoang, Tuyet; Howden, Benjamin P ; Monk, Ian R; Seemann, Torsten; Lee, Jean Y H; Stinear, Timothy P |
| 14 | Sep-2021 | Defective Severe Acute Respiratory Syndrome Coronavirus 2 Immune Responses in an Immunocompromised Individual With Prolonged Viral Replication. | Gordon, Claire L ; Smibert, Olivia C ; Holmes, Natasha E ; Chua, Kyra Y L ; Rose, Morgan T ; Drewett, George P ; James, Fiona L ; Mouhtouris, Effie ; Nguyen, Thi H O; Zhang, Wuji; Kedzierski, Lukasz; Rowntree, Louise C; Chua, Brendon Y; Caly, Leon; Catton, Mike G; Druce, Julian; Sait, Michelle; Seemann, Torsten; Sherry, Norelle L ; Howden, Benjamin P ; Kedzierska, Katherine; Kwong, Jason C ; Trubiano, Jason |
| 15 | 2021 | Search and Contain: Impact of an integrated genomic and epidemiological surveillance and response program for control of carbapenemase-producing Enterobacterales. | Lane, Courtney R; Brett, Judith; Schultz, Mark; Gorrie, Claire L; Stevens, Kerrie; Cameron, Donna R M; St George, Siobhan; van Diemen, Annaliese; Easton, Marion; Stuart, Rhonda L; Sait, Michelle; Peleg, Anton Y; Stewardson, Andrew J; Cheng, Allen C; Spelman, Denis W; Waters, Mary Jo; Ballard, Susan A; Sherry, Norelle L ; Williamson, Deborah A; Romanes, Finn; Sutton, Brett; Kwong, Jason C ; Seemann, Torsten; Goncalves da Silva, Anders; Stephens, Nicola; Howden, Benjamin P |
| 16 | 8-Dec-2020 | Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in Staphylococcus aureus. | Giulieri, Stefano G ; Guérillot, Romain; Kwong, Jason C ; Monk, Ian R; Hayes, Ashleigh S; Daniel, Diane; Baines, Sarah; Sherry, Norelle L ; Holmes, Natasha E ; Ward, Peter; Gao, Wei; Seemann, Torsten; Stinear, Timothy P; Howden, Benjamin P |
| 17 | Nov-2020 | Case Report: Confirmation by Metagenomic Sequencing of Visceral Leishmaniasis in an Immunosuppressed Returned Traveler. | Williams, Eloise; Isles, Nicole S; Seemann, Torsten; Kilpatrick, Trevor; Grigg, Andrew P ; Leroi, Marcel J ; Howden, Benjamin P ; Kwong, Jason C |
| 18 | Sep-2020 | Validation of a single-step, single-tube reverse transcription loop-mediated isothermal amplification assay for rapid detection of SARS-CoV-2 RNA. | Lee, Jean Y H; Best, Nickala; McAuley, Julie; Porter, Jessica L; Seemann, Torsten; Schultz, Mark B; Sait, Michelle; Orlando, Nicole; Mercoulia, Karolina; Ballard, Susan A; Druce, Julian; Tran, Thomas; Catton, Mike G; Pryor, Melinda J; Cui, Huanhuan L; Luttick, Angela; McDonald, Sean; Greenhalgh, Arran; Kwong, Jason C ; Sherry, Norelle L ; Graham, Maryza; Hoang, Tuyet; Herisse, Marion; Pidot, Sacha J; Williamson, Deborah A; Howden, Benjamin P ; Monk, Ian R; Stinear, Timothy P |
| 19 | 26-Aug-2019 | Genomics for molecular epidemiology and detecting transmission of carbapenemase-producing Enterobacterales in Victoria, Australia, 2012-2016. | Sherry, Norelle L ; Lane, Courtney R; Kwong, Jason C ; Schultz, Mark; Sait, Michelle; Stevens, Kerrie; Ballard, Susan; Gonçalves da Silva, Anders; Seemann, Torsten; Gorrie, Claire L; Stinear, Timothy P; Williamson, Deborah A; Brett, Judith; van Diemen, Annaliese; Easton, Marion; Howden, Benjamin P |
| 20 | 19-Feb-2019 | Remodelling of pSK1 Family Plasmids and Enhanced Chlorhexidine Tolerance in a Dominant Hospital Lineage of Methicillin-Resistant Staphylococcus aureus. | Baines, Sarah L; Jensen, Slade O; Firth, Neville; Gonçalves da Silva, Anders; Seemann, Torsten; Carter, Glen; Williamson, Deborah A; Howden, Benjamin P ; Stinear, Timothy P |
Loading...
2
0
20
0
false
0000-0003-0237-1473