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| | Publication Year | Title | Author(s) |
| 1 | Dec-2024 | Successful management of a multi-species outbreak of carbapenem-resistant organisms in Fiji: a prospective genomics-enhanced investigation and response. | Young-Sharma, Tracey; Lane, Courtney R; James, Rodney; Wilmot, Mathilda; Autar, Sanjeshni; Hui, Kylie; Strobel, Aneley Getahun; Lacey, Jake A; Kumar, Savneel; Datt, Ashlyn; Lata, Alvina; Cameron, Donna; Sherry, Norelle L ; Genaro, Sisilia; Ditukana, Timaima; Nabose, Ilisapeci; Goneyali, Apaitia; Bennett, Elizabeth; Kavoa, Anisi; Prasad, Shammi; Vakamocea, Alipate; Suka, Ana; Prasad, Prinika; Hussein, Farheen; Lin, Chantel; Jenney, Adam Wj; Buising, Kirsty; Naidu, Ravi; Howden, Benjamin P |
| 2 | Dec-2024 | High incidence of multidrug-resistant tuberculosis in Bhutan: A cohort study based on national TB surveillance data. | Dorji, Thinley; Tshering, Karchung; Adhikari, Lila; Jamtsho, Thinley; Bhujel, Pavitra; Lhaden, Pema; Sherry, Norelle L ; Lin, Chantel; Horan, Kristy; Wangchuk, Sonam; Andersson, Patiyan; Howden, Benjamin P |
| 3 | 15-Nov-2024 | Prevalence of cefixime-resistant Neisseria gonorrhoeae in Melbourne, Australia, 2021-2022. | Chow, Eric P F; Stevens, Kerrie; De Petra, Vesna; Chen, Marcus Y; Bradshaw, Catriona S; Sherry, Norelle L ; Barbee, Lindley A; Vodstrcil, Lenka A; Aguirre, Ivette; Seib, Kate L; Maddaford, Kate; Williamson, Deborah A; Howden, Benjamin P ; Fairley, Christopher K |
| 4 | Nov-2024 | Rifaximin prophylaxis causes resistance to the last-resort antibiotic daptomycin. | Turner, Adrianna M; Li, Lucy; Monk, Ian R; Lee, Jean Y H; Ingle, Danielle J; Portelli, Stephanie; Sherry, Norelle L ; Isles, Nicole; Seemann, Torsten; Sharkey, Liam K; Walsh, Calum J; Reid, Gavin E; Nie, Shuai; Eijkelkamp, Bart A; Holmes, Natasha E ; Collis, Brennan; Vogrin, Sara; Hiergeist, Andreas; Weber, Daniela; Gessner, Andre; Holler, Ernst; Ascher, David B; Duchene, Sebastian; Scott, Nichollas E; Stinear, Timothy P; Kwong, Jason C ; Gorrie, Claire L; Howden, Benjamin P ; Carter, Glen P |
| 5 | Mar-2024 | Intratumoral presence of the genotoxic gut bacteria pks+ E. coli, Enterotoxigenic Bacteroides fragilis, and Fusobacterium nucleatum and their association with clinicopathological and molecular features of colorectal cancer. | Joo, Jihoon E; Chu, Yen Lin; Georgeson, Peter; Walker, Romy; Mahmood, Khalid; Clendenning, Mark; Meyers, Aaron L; Como, Julia; Joseland, Sharelle; Preston, Susan G; Diepenhorst, Natalie; Toner, Julie; Ingle, Danielle J; Sherry, Norelle L ; Metz, Andrew; Lynch, Brigid M; Milne, Roger L; Southey, Melissa C; Hopper, John L; Win, Aung Ko; Macrae, Finlay A; Winship, Ingrid M; Rosty, Christophe; Jenkins, Mark A; Buchanan, Daniel D |
| 6 | 2024 | Emergence of carbapenemase-producing Enterobacterales (CPE) in patients with severe COVID-19 infection and successful control in intensive care. | Longhitano, Anthony; Campbell, Duncan; Mothobi, Nomvuyo; McKenzie, Alison; Bartolo, Caroline; Saha, Sajal; Sherry, Norelle L ; Athan, Eugene |
| 7 | 15-Nov-2023 | Comparison of contemporary invasive and non-invasive Streptococcus pneumoniae isolates reveals new insights into circulating anti-microbial resistance determinants. | Higgs, Charlie; Kumar, Lamali Sadeesh; Stevens, Kerrie; Strachan, Janet; Korman, Tony; Horan, Kristy; Daniel, Diane; Russell, Madeline; McDevitt, Christopher A; Sherry, Norelle L ; Stinear, Timothy P; Howden, Benjamin P ; Gorrie, Claire L |
| 8 | Aug-2023 | Public health implementation of pathogen genomics: the role for accreditation and application of ISO standards. | Ballard, Susan A; Sherry, Norelle L ; Howden, Benjamin P |
| 9 | Aug-2023 | The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia. | Porter, Ashleigh F; Featherstone, Leo; Lane, Courtney R; Sherry, Norelle L ; Nolan, Monica L; Lister, David; Seemann, Torsten; Duchene, Sebastian; Howden, Benjamin P |
| 10 | Jul-2023 | Population structure, serotype distribution and antibiotic resistance of Streptococcus pneumoniae causing invasive disease in Victoria, Australia. | Higgs, Charlie; Kumar, Lamali Sadeesh; Stevens, Kerrie; Strachan, Janet; Sherry, Norelle L ; Horan, Kristy; Zhang, Josh; Stinear, Timothy P; Howden, Benjamin P ; Gorrie, Claire L |
| 11 | 28-Feb-2023 | The use of whole genome sequencing for tuberculosis public health activities in Australia: a joint statement of the National Tuberculosis Advisory Committee and Communicable Diseases Genomics Network. | Donnan, Ellen J; Marais, Ben J; Coulter, Chris; Waring, Justin; Bastian, Ivan; Williamson, Deborah A; Sherry, Norelle L ; Bond, Katherine; Sintchenko, Vitali; Meumann, Ella M; Horan, Kristy; Cooley, Louise; Denholm, Justin T |
| 12 | 4-Jan-2023 | An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance. | Sherry, Norelle L ; Horan, Kristy A; Ballard, Susan A; Gonҫalves da Silva, Anders; Gorrie, Claire L; Schultz, Mark B; Stevens, Kerrie; Valcanis, Mary; Sait, Michelle L; Stinear, Timothy P; Howden, Benjamin P ; Seemann, Torsten |
| 13 | Sep-2022 | Temporal differences in culturable severe acute respiratory coronavirus virus 2 (SARS-CoV-2) from the respiratory and gastrointestinal tracts in a patient with moderate coronavirus disease 2019 (COVID-19). | Audsley, Jennifer M; Holmes, Natasha E ; Mordant, Francesca L; Douros, Celia; Zufan, Sara E; Nguyen, Thi H O; Kedzierski, Lukasz; Rowntree, Louise C; Hensen, Luca; Subbarao, Kanta; Kedzierska, Katherine; Nicholson, Suellen; Sherry, Norelle L ; Thevarajan, Irani; Tran, Thomas; Druce, Julian |
| 14 | 3-Jun-2022 | State-wide genomic epidemiology investigations of COVID-19 in healthcare workers in 2020 Victoria, Australia: Qualitative thematic analysis to provide insights for future pandemic preparedness. | Watt, Anne E; Sherry, Norelle L ; Andersson, Patiyan; Lane, Courtney R; Johnson, Sandra; Wilmot, Mathilda; Horan, Kristy; Sait, Michelle; Ballard, Susan A; Crachi, Christina; Beck, Dianne J; Marshall, Caroline; Kainer, Marion A; Stuart, Rhonda; McGrath, Christian; Kwong, Jason C ; Bass, Pauline; Kelley, Peter G; Crowe, Amy; Guy, Stephen; Macesic, Nenad; Smith, Karen; Williamson, Deborah A; Seemann, Torsten; Howden, Benjamin P |
| 15 | 19-May-2022 | SARS-CoV-2 infection results in immune responses in the respiratory tract and peripheral blood that suggest mechanisms of disease severity. | Zhang, Wuji; Chua, Brendon Y; Selva, Kevin J; Kedzierski, Lukasz; Ashhurst, Thomas M; Haycroft, Ebene R; Shoffner-Beck, Suzanne K; Hensen, Luca; Boyd, David F; James, Fiona L ; Mouhtouris, Effie ; Kwong, Jason C ; Chua, Kyra Y L ; Drewett, George P ; Copaescu, Ana ; Dobson, Julie E ; Rowntree, Louise C; Habel, Jennifer R; Allen, Lilith F; Koay, Hui-Fern; Neil, Jessica A; Gartner, Matthew J; Lee, Christina Y; Andersson, Patiyan; Khan, Sadid F; Blakeway, Luke; Wisniewski, Jessica; McMahon, James H; Vine, Erica E; Cunningham, Anthony L; Audsley, Jennifer; Thevarajan, Irani; Seemann, Torsten; Sherry, Norelle L ; Amanat, Fatima; Krammer, Florian; Londrigan, Sarah L; Wakim, Linda M; King, Nicholas J C; Godfrey, Dale I; Mackay, Laura K; Thomas, Paul G; Nicholson, Suellen; Arnold, Kelly B; Chung, Amy W; Holmes, Natasha E ; Smibert, Olivia C ; Trubiano, Jason ; Gordon, Claire L ; Nguyen, Thi H O; Kedzierska, Katherine |
| 16 | 12-Apr-2022 | Multi-site implementation of whole genome sequencing for hospital infection control: A prospective genomic epidemiological analysis. | Sherry, Norelle L ; Gorrie, Claire L; Kwong, Jason C ; Higgs, Charlie; Stuart, Rhonda L; Marshall, Caroline; Ballard, Susan A; Sait, Michelle; Korman, Tony M; Slavin, Monica A; Lee, Robyn S; Graham, Maryza; Leroi, Marcel J ; Worth, Leon J; Chan, Hiu Tat; Seemann, Torsten; Grayson, M Lindsay ; Howden, Benjamin P |
| 17 | 26-Jan-2022 | Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings. | Higgs, Charlie; Sherry, Norelle L ; Seemann, Torsten; Horan, Kristy; Walpola, Hasini; Kinsella, Paul; Bond, Katherine; Williamson, Deborah A; Marshall, Caroline; Kwong, Jason C ; Grayson, M Lindsay ; Stinear, Timothy P; Gorrie, Claire L; Howden, Benjamin P |
| 18 | Nov-2021 | Staff to staff transmission as a driver of healthcare worker infections with COVID-19. | Gordon, Claire L ; Trubiano, Jason ; Holmes, Natasha E ; Chua, Kyra Y L ; Feldman, Jeff; Young, Greg; Sherry, Norelle L ; Grayson, M Lindsay ; Kwong, Jason C |
| 19 | Nov-2021 | Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis. | Gorrie, Claire L; Da Silva, Anders Gonçalves; Ingle, Danielle J; Higgs, Charlie; Seemann, Torsten; Stinear, Timothy P; Williamson, Deborah A; Kwong, Jason C ; Grayson, M Lindsay ; Sherry, Norelle L ; Howden, Benjamin P |
| 20 | 20-Oct-2021 | Daptomycin Resistance Occurs Predominantly in vanA-Type Vancomycin-Resistant Enterococcus faecium in Australasia and Is Associated With Heterogeneous and Novel Mutations. | Li, Lucy; Higgs, Charlie; Turner, Adrianna M; Nong, Yi; Gorrie, Claire L; Sherry, Norelle L ; Dyet, Kristin H; Seemann, Torsten; Williamson, Deborah A; Stinear, Timothy P; Howden, Benjamin P ; Carter, Glen P |
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