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Title
Systems genetics identifies a convergent gene network for cognition and neurodevelopmental disease
Publication Date
2016-02
Author(s)
Johnson, Michael R
Shkura, Kirill
Langley, Sarah R
Delahaye-Duriez, Andree
Srivastava, Prashant M
Hill, W David
Rackham, Owen JL
Davies, Gail
Harris, Sarah E
Moreno-Moral, Aida
Rotival, Maxime
Petrovski, Slavé
Katz, Anaïs
Hayward, Caroline
Porteous, David J
Smith, Blair H
Padmanabhan, Sandosh
Hocking, Lynne J
Starr, John M
Liewald, David C
Visconti, Alessia
Falchi, Mario
Bottolo, Leonardo
Rossetti, Tiziana
Danis, Bénédicte
Mazzuferi, Manuela
Foerch, Patrik
Grote, Alexander
Helmstaedter, Christoph
Becker, Albert J
Kaminski, Rafal M
Deary, Ian J
Petretto, Enrico
Speed, Doug
Subject
Developmental disorders
Gene regulatory networks
Systems biology
Type of document
Journal Article
OrcId
0000-0002-1527-961X
DOI
dx.doi.org/10.1038/nn.4205
Abstract
Genetic determinants of cognition are poorly characterized, and their relationship to genes that confer risk for neurodevelopmental disease is unclear. Here we performed a systems-level analysis of genome-wide gene expression data to infer gene-regulatory networks conserved across species and brain regions. Two of these networks, M1 and M3, showed replicable enrichment for common genetic variants underlying healthy human cognitive abilities, including memory. Using exome sequence data from 6,871 trios, we found that M3 genes were also enriched for mutations ascertained from patients with neurodevelopmental disease generally, and intellectual disability and epileptic encephalopathy in particular. M3 consists of 150 genes whose expression is tightly developmentally regulated, but which are collectively poorly annotated for known functional pathways. These results illustrate how systems-level analyses can reveal previously unappreciated relationships between neurodevelopmental disease-associated genes in the developed human brain, and provide empirical support for a convergent gene-regulatory network influencing cognition and neurodevelopmental disease.
Link
Citation
Nature Neuroscience 2016; 19(2): 223-32
Jornal Title
Nature Neuroscience

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