Please use this identifier to cite or link to this item: https://ahro.austin.org.au/austinjspui/handle/1/18657
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dc.contributor.authorPathan, Mohashin-
dc.contributor.authorKeerthikumar, Shivakumar-
dc.contributor.authorAng, Ching-Seng-
dc.contributor.authorGangoda, Lahiru-
dc.contributor.authorQuek, Camelia Y J-
dc.contributor.authorWilliamson, Nicholas A-
dc.contributor.authorMouradov, Dmitri-
dc.contributor.authorSieber, Oliver M-
dc.contributor.authorSimpson, Richard J-
dc.contributor.authorSalim, Agus-
dc.contributor.authorBacic, Antony-
dc.contributor.authorHill, Andrew F-
dc.contributor.authorStroud, David A-
dc.contributor.authorRyan, Michael T-
dc.contributor.authorAgbinya, Johnson I-
dc.contributor.authorMariadason, John M-
dc.contributor.authorBurgess, Antony W-
dc.contributor.authorMathivanan, Suresh-
dc.date2015-06-17-
dc.date.accessioned2018-08-30T06:34:06Z-
dc.date.available2018-08-30T06:34:06Z-
dc.date.issued2015-08-
dc.identifier.citationProteomics 2015; 15(15): 2597-2601en
dc.identifier.urihttps://ahro.austin.org.au/austinjspui/handle/1/18657-
dc.description.abstractAs high-throughput techniques including proteomics become more accessible to individual laboratories, there is an urgent need for a user-friendly bioinformatics analysis system. Here, we describe FunRich, an open access, standalone functional enrichment and network analysis tool. FunRich is designed to be used by biologists with minimal or no support from computational and database experts. Using FunRich, users can perform functional enrichment analysis on background databases that are integrated from heterogeneous genomic and proteomic resources (>1.5 million annotations). Besides default human specific FunRich database, users can download data from the UniProt database, which currently supports 20 different taxonomies against which enrichment analysis can be performed. Moreover, the users can build their own custom databases and perform the enrichment analysis irrespective of organism. In addition to proteomics datasets, the custom database allows for the tool to be used for genomics, lipidomics and metabolomics datasets. Thus, FunRich allows for complete database customization and thereby permits for the tool to be exploited as a skeleton for enrichment analysis irrespective of the data type or organism used. FunRich (http://www.funrich.org) is user-friendly and provides graphical representation (Venn, pie charts, bar graphs, column, heatmap and doughnuts) of the data with customizable font, scale and color (publication quality).en
dc.language.isoeng-
dc.subjectBioinformaticsen
dc.subjectEnrichment analysisen
dc.subjectInteraction networksen
dc.subjectOmicsen
dc.titleFunRich: An open access standalone functional enrichment and interaction network analysis tool.en
dc.typeJournal Articleen
dc.identifier.journaltitleProteomicsen
dc.identifier.affiliationDepartment of Surgery (RMH), University of Melbourne, Parkville, Australiaen
dc.identifier.affiliationLudwig Institute for Cancer Research, Austin Health, Heidelberg, Victoria, Australiaen
dc.identifier.affiliationOlivia Newton-John Cancer Research Institute, Heidelberg, Victoria, Australiaen
dc.identifier.affiliationDepartment of Electronic Engineering, La Trobe University, Bundoora, Australiaen
dc.identifier.affiliationSchool of Cancer Medicine, La Trobe University, Melbourne, Australiaen
dc.identifier.affiliationThe Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Australiaen
dc.identifier.affiliationDepartment of Biochemistry and Molecular Biology, University of Melbourne, Melbourne, Australiaen
dc.identifier.affiliationWalter and Eliza Hall Institute of Medical Research, Parkville, Australiaen
dc.identifier.affiliationFaculty of Medicine, Dentistry and Health Sciences, Department of Medical Biology, University of Melbourne, Parkville, Australiaen
dc.identifier.affiliationDepartment of Mathematics and Statistics, La Trobe University, Bundoora, Australiaen
dc.identifier.affiliationARC Centre of Excellence in Plant Cell Walls, School of Botany, The University of Melbourne, Parkville, VIC 3010, Australiaen
dc.identifier.affiliationDepartment of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Australiaen
dc.identifier.affiliationDepartment of Biochemistry and Molecular Biology, Monash University, Australiaen
dc.identifier.doi10.1002/pmic.201400515en
dc.type.contentTexten
dc.identifier.pubmedid25921073-
dc.type.austinJournal Article-
dc.type.austinResearch Support, Non-U.S. Gov't-
local.name.researcherMariadason, John M
item.openairetypeJournal Article-
item.cerifentitytypePublications-
item.fulltextNo Fulltext-
item.grantfulltextnone-
item.languageiso639-1en-
item.openairecristypehttp://purl.org/coar/resource_type/c_18cf-
crisitem.author.deptOlivia Newton-John Cancer Research Institute-
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